spectral_denoising documentation

Welcome to python package for spectral denoising! The source code can be download from Spectral denoising Github repository.

If you encounter any issues, queries or need support, don’t hesitate to contact

For detail methodology or you want to cite this work, please refer to the paper: https://pubmed.ncbi.nlm.nih.gov/39108483/

This package contains the following modules:

1. Classic spectral denoising: These functions are used to remove noise ions in annotated spectra based on intensity distribution and subformula assignment for each ion.

2. Denoising search: In cases where the spectra are not annotated and molecular information are not feasible, spectral denoising is performed on query spectrum using molecular information of all candidate spectra within predefined precursor mass range. The denoised spectra are used to calculate similarity against reference spectra.

Quickstart:

• Installation
• Quickstart

Spectral denoising

• Spectral denoising: electronic denoising
• Spectral denoising: formula denoising
• Spectral denoising: for single spectrum
• Spectral denoising: in bacth mode
• Spectral denoising: useful functions

Denoising search

• Denoising search: for single spectrum
• Denoising search: bacth mode

All API References

• spectral_denoising package