Index

A

add_noise() (in module spectral_denoising.noise)

add_spectra() (in module spectral_denoising.spectral_operations) arr_to_str() (in module spectral_denoising.spectral_operations)

B

break_spectrum() (in module spectral_denoising.spectral_operations)

C

calculate_precursormz() (in module spectral_denoising.chem_utils) cas_to_smiles() (in module spectral_denoising.identifier_utils) check_candidates() (in module spectral_denoising.spectral_denoising) check_pattern() (in module spectral_denoising.file_io)

check_ratio() (in module spectral_denoising.seven_golden_rules) check_senior() (in module spectral_denoising.seven_golden_rules) compare_spectra() (in module spectral_denoising.spectral_operations) create_classyfire_url() (in module spectral_denoising.identifier_utils)

D

denoising_search() (in module spectral_denoising.denoising_search) denoising_search_batch() (in module spectral_denoising.denoising_search) desalter() (in module spectral_denoising.chem_utils)

determine_adduct_charge() (in module spectral_denoising.chem_utils) determine_parent_coefs() (in module spectral_denoising.chem_utils) dict_to_formula() (in module spectral_denoising.spectral_denoising) dnl_denoising() (in module spectral_denoising.spectral_denoising)

E

electronic_denoising() (in module spectral_denoising.spectral_denoising) entropy_similairty() (in module spectral_denoising.spectral_operations) everything_to_formula() (in module spectral_denoising.identifier_utils) everything_to_image() (in module spectral_denoising.identifier_utils)

everything_to_inchikey() (in module spectral_denoising.identifier_utils) everything_to_mw() (in module spectral_denoising.identifier_utils) everything_to_smiles() (in module spectral_denoising.identifier_utils) export_denoising_searches() (in module spectral_denoising.file_io)

F

formula_denoising() (in module spectral_denoising.spectral_denoising)

G

generate_chemical_noise() (in module spectral_denoising.noise) generate_noise() (in module spectral_denoising.noise) get_all_master_formulas() (in module spectral_denoising.denoising_search) get_all_subformulas() (in module spectral_denoising.spectral_denoising)

get_bond_similarity() (in module spectral_denoising.chem_utils) get_classyfire() (in module spectral_denoising.identifier_utils) get_color_gradient() (in module spectral_denoising.spectra_plotter) get_denoise_tag() (in module spectral_denoising.spectral_denoising) get_pmz_statistics() (in module spectral_denoising.spectral_denoising)

H

has_benzene() (in module spectral_denoising.spectral_denoising)

head_to_tail_plot() (in module spectral_denoising.spectra_plotter) hex_to_RGB() (in module spectral_denoising.spectra_plotter)

I

inchikey_to_smiles() (in module spectral_denoising.identifier_utils) is_cas_number() (in module spectral_denoising.identifier_utils) is_formula() (in module spectral_denoising.identifier_utils)

is_inchikey() (in module spectral_denoising.identifier_utils) is_mol() (in module spectral_denoising.identifier_utils) is_smiles() (in module spectral_denoising.identifier_utils)

M

module spectral_denoising.chem_utils spectral_denoising.constant spectral_denoising.denoising_search spectral_denoising.file_io spectral_denoising.identifier_utils spectral_denoising.noise spectral_denoising.search_utils spectral_denoising.seven_golden_rules spectral_denoising.spectra_plotter spectral_denoising.spectral_denoising spectral_denoising.spectral_operations

ms2_plot() (in module spectral_denoising.spectra_plotter) ms_reduce() (in module spectral_denoising.spectral_denoising) msdial_to_array() (in module spectral_denoising.spectral_operations)

N

name_to_smiles() (in module spectral_denoising.identifier_utils)

normalize_spectrum() (in module spectral_denoising.spectral_operations) normalized_entropy() (in module spectral_denoising.spectral_operations)

P

pack_spectrum() (in module spectral_denoising.spectral_operations) parse_adduct() (in module spectral_denoising.chem_utils)

parse_formula() (in module spectral_denoising.chem_utils) prep_formula() (in module spectral_denoising.spectral_denoising)

Q

quick_search_sorted() (in module spectral_denoising.search_utils)

quick_search_values() (in module spectral_denoising.search_utils)

R

read_df() (in module spectral_denoising.file_io) read_msp() (in module spectral_denoising.file_io)

remove_precursor() (in module spectral_denoising.spectral_operations) remove_zero_ions() (in module spectral_denoising.spectral_operations) replace_adduct_string() (in module spectral_denoising.chem_utils)

S

sanitize_spectrum() (in module spectral_denoising.spectral_operations) save_df() (in module spectral_denoising.file_io) search_ions() (in module spectral_denoising.spectral_operations) slice_spectrum() (in module spectral_denoising.spectral_operations) smiles_to_inchikey() (in module spectral_denoising.identifier_utils) sort_spectrum() (in module spectral_denoising.spectral_operations) spectral_denoising() (in module spectral_denoising.spectral_denoising) spectral_denoising.chem_utils module spectral_denoising.constant module spectral_denoising.denoising_search module spectral_denoising.file_io module spectral_denoising.identifier_utils module spectral_denoising.noise module

spectral_denoising.search_utils module spectral_denoising.seven_golden_rules module spectral_denoising.spectra_plotter module spectral_denoising.spectral_denoising module spectral_denoising.spectral_operations module spectral_denoising_batch() (in module spectral_denoising.spectral_denoising) spectral_denoising_with_master_formulas() (in module spectral_denoising.spectral_denoising) spectral_entropy() (in module spectral_denoising.spectral_operations) standardize_col() (in module spectral_denoising.file_io) standardize_spectrum() (in module spectral_denoising.spectral_operations) str_to_arr() (in module spectral_denoising.spectral_operations) string_search() (in module spectral_denoising.search_utils)

T

threshold_denoising() (in module spectral_denoising.spectral_denoising)

transpose_formula() (in module spectral_denoising.chem_utils) truncate_spectrum() (in module spectral_denoising.spectral_operations)

W

wrap_labels() (in module spectral_denoising.spectra_plotter)

write_to_msp() (in module spectral_denoising.file_io)